Package io.github.WeronikaJargielo.protein_interaction_finder

Class AminoAromaticInteraction

java.lang.Object

io.github.WeronikaJargielo.protein_interaction_finder.AminoAromaticInteraction

public final class AminoAromaticInteraction
extends java.lang.Object

Class representing amino-aromatic interaction.

Constructor Summary

Constructors

Constructor	Description
AminoAromaticInteraction(AminoAcid aromaticAminoAcid, AminoAcid aminoAminoAcid, double distanceBtwCationRing, double polarAngle, double azimuthalAngle)	Instantiates new amino-aromatic interaction.

Method Summary

Modifier and Type	Method	Description
boolean	equals(java.lang.Object o)
AminoAcid	getAminoAminoAcid()	Returns amino acid of interaction participant with amino group.
AminoAcid	getAromaticAminoAcid()	Returns amino acid of aromatic interaction participant.
double	getAzimuthalAngle()	Returns azimuthal angle for aromatic ring and amino group representative.
double	getDistanceBtwCationRing()	Returns distance between aromatic ring centroid and amino group representative.
double	getPolarAngle()	Returns polar angle for aromatic ring and amino group representative.
int	hashCode()
java.lang.String	toString()

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

AminoAromaticInteraction

public AminoAromaticInteraction(AminoAcid aromaticAminoAcid,
                                AminoAcid aminoAminoAcid,
                                double distanceBtwCationRing,
                                double polarAngle,
                                double azimuthalAngle)

Instantiates new amino-aromatic interaction. For parameters' full description see here.

Parameters:

aromaticAminoAcid - Amino acid of aromatic interaction participant.

aminoAminoAcid - Amino acid of interaction participant with amino group.

distanceBtwCationRing - Distance between aromatic ring centroid and amino group representative.

polarAngle - Polar angle for aromatic ring and amino group representative.

azimuthalAngle - Azimuthal angle for aromatic ring and amino group representative.

Method Detail

getAromaticAminoAcid

public AminoAcid getAromaticAminoAcid()

Returns amino acid of aromatic interaction participant.

Returns:

Amino acid of aromatic interaction participant.

getAminoAminoAcid

public AminoAcid getAminoAminoAcid()

Returns amino acid of interaction participant with amino group.

Returns:

Amino acid of interaction participant with amino group.

getDistanceBtwCationRing

public double getDistanceBtwCationRing()

Returns distance between aromatic ring centroid and amino group representative.

Returns:

Distance between aromatic ring centroid and amino group representative.

getPolarAngle

public double getPolarAngle()

Returns polar angle for aromatic ring and amino group representative.

Returns:

Polar angle for aromatic ring and amino group representative.

See Also:

AromaticRing.calculatePolarAngleOfAtom(Atom)

getAzimuthalAngle

public double getAzimuthalAngle()

Returns azimuthal angle for aromatic ring and amino group representative.

Returns:

Azimuthal angle for aromatic ring and amino group representative.

See Also:

AromaticRing.calculateAzimuthalAngleOfAtom(Atom)

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object