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A

ALA - io.github.WeronikaJargielo.protein_interaction_finder.AminoAcidAbbreviations

Alanine

AminoAcid - Class in io.github.WeronikaJargielo.protein_interaction_finder

Class representing single amino acid in protein.

AminoAcid(AminoAcidAbbreviations, String, int) - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AminoAcid

Instantiates new Amino acid.

AminoAcid(Group) - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AminoAcid

Instantiates new Amino acid.

AminoAcidAbbreviations - Enum in io.github.WeronikaJargielo.protein_interaction_finder

IUPAC abbreviations for each natural amino acid.

AminoAromaticInteraction - Class in io.github.WeronikaJargielo.protein_interaction_finder

Class representing amino-aromatic interaction.

AminoAromaticInteraction(AminoAcid, AminoAcid, double, double, double) - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AminoAromaticInteraction

Instantiates new amino-aromatic interaction.

AminoAromaticInteractionCriteria - Class in io.github.WeronikaJargielo.protein_interaction_finder

Class representing criteria for identifying amino-aromatic interactions.

AminoAromaticInteractionCriteria() - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AminoAromaticInteractionCriteria

Instantiates new amino-aromatic interaction criteria using default boundary values.

AminoAromaticInteractionCriteria(double, double, double, double, double, double) - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AminoAromaticInteractionCriteria

Instantiates new amino-aromatic interaction criteria using custom boundary values.

ARG - io.github.WeronikaJargielo.protein_interaction_finder.AminoAcidAbbreviations

Arginine

AromaticAromaticInteraction - Class in io.github.WeronikaJargielo.protein_interaction_finder

Class representing aromatic-aromatic interaction.

AromaticAromaticInteraction(AminoAcid, AminoAcid, double, double) - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AromaticAromaticInteraction

Instantiates new aromatic-aromatic interaction.

AromaticAromaticInteractionCriteria - Class in io.github.WeronikaJargielo.protein_interaction_finder

Class representing criteria for identifying aromatic-aromatic interactions.

AromaticAromaticInteractionCriteria() - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AromaticAromaticInteractionCriteria

Instantiates new aromatic-aromatic interaction criteria using default boundary values.

AromaticAromaticInteractionCriteria(double, double, double, double) - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AromaticAromaticInteractionCriteria

Instantiates new aromatic-aromatic interaction criteria using custom boundary values.

AromaticRing - Class in io.github.WeronikaJargielo.protein_interaction_finder

Class representing single aromatic ring in protein.

AromaticRing(List<Atom>) - Constructor for class io.github.WeronikaJargielo.protein_interaction_finder.AromaticRing

Instantiates new Aromatic ring.

ASN - io.github.WeronikaJargielo.protein_interaction_finder.AminoAcidAbbreviations

Asparagine

ASP - io.github.WeronikaJargielo.protein_interaction_finder.AminoAcidAbbreviations

Aspartic acid

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