All Classes

Class	Description
AminoAcid	Class representing single amino acid in protein.
AminoAcidAbbreviations	IUPAC abbreviations for each natural amino acid.
AminoAromaticInteraction	Class representing amino-aromatic interaction.
AminoAromaticInteractionCriteria	Class representing criteria for identifying amino-aromatic interactions.
AromaticAromaticInteraction	Class representing aromatic-aromatic interaction.
AromaticAromaticInteractionCriteria	Class representing criteria for identifying aromatic-aromatic interactions.
AromaticRing	Class representing single aromatic ring in protein.
DisulphideBridge	Class representing disulphide bridge.
DisulphideBridgeCriteria	Class representing criteria for identifying disulphide bridges.
HydrogenBond	Class representing hydrogen bond.
HydrogenBondCriteria	Class representing criteria for identifying hydrogen bonds.
HydrophobicInteraction	Class representing hydrophobic interaction.
HydrophobicInteractionCriteria	Class representing criteria for identifying hydrophobic interactions.
IonicInteraction	Class representing ionic interaction.
IonicInteractionCriteria	Class representing criteria for identifying ionic interactions.
PdbStructureParser	Wrapper for BioJava Structure class.
ProteinInteractionFinder	Class for identifying all implemented interactions.
SulphurAromaticInteraction	Class representing sulphur-aromatic interaction.
SulphurAromaticInteractionCriteria	Class representing criteria for identifying sulphur-aromatic interactions.