Package io.github.WeronikaJargielo.protein_interaction_finder

Class AromaticAromaticInteractionCriteria

java.lang.Object

io.github.WeronikaJargielo.protein_interaction_finder.AromaticAromaticInteractionCriteria

public final class AromaticAromaticInteractionCriteria
extends java.lang.Object

Class representing criteria for identifying aromatic-aromatic interactions. See here.

Constructor Summary

Constructors

Constructor	Description
AromaticAromaticInteractionCriteria()	Instantiates new aromatic-aromatic interaction criteria using default boundary values.
AromaticAromaticInteractionCriteria(double minDistanceBtwRings, double maxDistanceBtwRings, double minAngleBtwRings, double maxAngleBtwRings)	Instantiates new aromatic-aromatic interaction criteria using custom boundary values.

Method Summary

Modifier and Type	Method	Description
boolean	equals(java.lang.Object o)
double	getMaxAngleBtwRings()	Returns maximum angle between aromatic rings' normal vectors.
double	getMaxDistanceBtwRings()	Returns maximum distance between aromatic rings' centroids.
double	getMinAngleBtwRings()	Returns minimum angle between aromatic rings' normal vectors.
double	getMinDistanceBtwRings()	Returns minimum distance between aromatic rings' centroids.
int	hashCode()
java.lang.String	toString()

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

AromaticAromaticInteractionCriteria

public AromaticAromaticInteractionCriteria()

Instantiates new aromatic-aromatic interaction criteria using default boundary values. See here.

AromaticAromaticInteractionCriteria

public AromaticAromaticInteractionCriteria(double minDistanceBtwRings,
                                           double maxDistanceBtwRings,
                                           double minAngleBtwRings,
                                           double maxAngleBtwRings)

Instantiates new aromatic-aromatic interaction criteria using custom boundary values. See here.

Parameters:

minDistanceBtwRings - Minimum distance between aromatic rings' centroids.

maxDistanceBtwRings - Maximum distance between aromatic rings' centroids.

minAngleBtwRings - Minimum angle between aromatic rings' normal vectors.

maxAngleBtwRings - Maximum angle between aromatic rings' normal vectors.

Method Detail

getMinDistanceBtwRings

public double getMinDistanceBtwRings()

Returns minimum distance between aromatic rings' centroids.

Returns:

Minimum distance between aromatic rings' centroids.

getMaxDistanceBtwRings

public double getMaxDistanceBtwRings()

Returns maximum distance between aromatic rings' centroids.

Returns:

Maximum distance between aromatic rings' centroids.

getMinAngleBtwRings

public double getMinAngleBtwRings()

Returns minimum angle between aromatic rings' normal vectors.

Returns:

Minimum angle between aromatic rings' normal vectors.

getMaxAngleBtwRings

public double getMaxAngleBtwRings()

Returns maximum angle between aromatic rings' normal vectors.

Returns:

Maximum angle between aromatic rings' normal vectors.

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object