Package io.github.WeronikaJargielo.protein_interaction_finder

Class SulphurAromaticInteraction

java.lang.Object

io.github.WeronikaJargielo.protein_interaction_finder.SulphurAromaticInteraction

public final class SulphurAromaticInteraction
extends java.lang.Object

Class representing sulphur-aromatic interaction.

Constructor Summary

Constructors

Constructor	Description
SulphurAromaticInteraction(AminoAcid aromaticAminoAcid, AminoAcid sulphurAminoAcid, double distanceBtwRingSulphur, double elevationAngle, double equatorialAngle)	Instantiates new sulphur-aromatic interaction.

Method Summary

Modifier and Type	Method	Description
boolean	equals(java.lang.Object o)
AminoAcid	getAromaticAminoAcid()	Returns amino acid of aromatic interaction participant.
double	getDistanceBtwRingSulphur()	Returns distance between aromatic ring centroid and sulphur atom.
double	getElevationAngle()	Returns elevation angle for aromatic ring and sulphur atom.
double	getEquatorialAngle()	Returns equatorial angle for aromatic ring and sulphur atom.
AminoAcid	getSulphurAminoAcid()	Returns amino acid with sulphur atom.
int	hashCode()
java.lang.String	toString()

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

SulphurAromaticInteraction

public SulphurAromaticInteraction(AminoAcid aromaticAminoAcid,
                                  AminoAcid sulphurAminoAcid,
                                  double distanceBtwRingSulphur,
                                  double elevationAngle,
                                  double equatorialAngle)

Instantiates new sulphur-aromatic interaction. For parameters' full description see here.

Parameters:

aromaticAminoAcid - Amino acid of aromatic interaction participant.

sulphurAminoAcid - Amino acid of interaction participant with sulphur atom.

distanceBtwRingSulphur - Distance between aromatic ring centroid and sulphur atom.

elevationAngle - Elevation angle for aromatic ring and sulphur atom.

equatorialAngle - Equatorial angle for aromatic ring and sulphur atom.

Method Detail

getAromaticAminoAcid

public AminoAcid getAromaticAminoAcid()

Returns amino acid of aromatic interaction participant.

Returns:

Amino acid of aromatic interaction participant.

getSulphurAminoAcid

public AminoAcid getSulphurAminoAcid()

Returns amino acid with sulphur atom.

Returns:

Amino acid with sulphur atom.

getDistanceBtwRingSulphur

public double getDistanceBtwRingSulphur()

Returns distance between aromatic ring centroid and sulphur atom.

Returns:

Distance between aromatic ring centroid and sulphur atom.

getElevationAngle

public double getElevationAngle()

Returns elevation angle for aromatic ring and sulphur atom.

Returns:

Elevation angle for aromatic ring and sulphur atom.

See Also:

AromaticRing.calculateElevationAngleOfAtom(Atom)

getEquatorialAngle

public double getEquatorialAngle()

Returns equatorial angle for aromatic ring and sulphur atom.

Returns:

Equatorial angle for aromatic ring and sulphur atom.

See Also:

AromaticRing.calculateEquatorialAngleOfAtom(Atom)

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object