java.lang.Object
- io.github.WeronikaJargielo.protein_interaction_finder.DisulphideBridgeCriteria

```
public class DisulphideBridgeCriteria
extends java.lang.Object
```
Class representing criteria for identifying disulphide bridges. See here.

Constructor Summary

Constructors
Constructor	Description
`DisulphideBridgeCriteria()`	Instantiates new disulphide bridges criteria using default boundary values.
`DisulphideBridgeCriteria(double minDistanceBtwSulphurs, double maxDistanceBtwSulphurs, double minAbsDihAngleSS, double maxAbsDihAngleSS, double lowerRangeMinAbsDihAngle1, double lowerRangeMaxAbsDihAngle1, double upperRangeMinAbsDihAngle1, double upperRangeMaxAbsDihAngle1, double lowerRangeMinAbsDihAngle2, double lowerRangeMaxAbsDihAngle2, double upperRangeMinAbsDihAngle2, double upperRangeMaxAbsDihAngle2)`	Instantiates new disulphide bridges criteria using custom boundary values.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(java.lang.Object o)`
`double`	`getDistanceBtwCAs()`	Returns maximum distance between CA atoms of participating cysteines.
`double`	`getDistanceBtwCBs()`	Returns maximum distance between CB atoms of participating cysteines.
`double`	`getLowerRangeMaxAbsDihAngle1()`	Returns maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in first range.
`double`	`getLowerRangeMaxAbsDihAngle2()`	Returns maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in first range.
`double`	`getLowerRangeMinAbsDihAngle1()`	Returns minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in first range.
`double`	`getLowerRangeMinAbsDihAngle2()`	Returns minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in first range.
`double`	`getMaxAbsDihAngleSS()`	Returns maximum dihedral angle between planes formed by CB1, S1, S2 and S1, S2, CB2 atoms (1 - first cysteine, 2 - second cysteine).
`double`	`getMaxDistanceBtwSulphurs()`	Returns maximum distance between sulphur atoms of participating cysteines.
`double`	`getMinAbsDihAngleSS()`	Returns minimum dihedral angle between planes formed by CB1, S1, S2 and S1, S2, CB2 atoms (1 - first cysteine, 2 - second cysteine).
`double`	`getMinDistanceBtwSulphurs()`	Returns minimum distance between sulphur atoms of participating cysteines.
`double`	`getUpperRangeMaxAbsDihAngle1()`	Returns maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in second range.
`double`	`getUpperRangeMaxAbsDihAngle2()`	Returns maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in second range.
`double`	`getUpperRangeMinAbsDihAngle1()`	Returns minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in second range.
`double`	`getUpperRangeMinAbsDihAngle2()`	Returns minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in second range.
`int`	`hashCode()`
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - DisulphideBridgeCriteria
```
public DisulphideBridgeCriteria()
```
    Instantiates new disulphide bridges criteria using default boundary values. See here.
  - DisulphideBridgeCriteria
```
public DisulphideBridgeCriteria(double minDistanceBtwSulphurs,
                                double maxDistanceBtwSulphurs,
                                double minAbsDihAngleSS,
                                double maxAbsDihAngleSS,
                                double lowerRangeMinAbsDihAngle1,
                                double lowerRangeMaxAbsDihAngle1,
                                double upperRangeMinAbsDihAngle1,
                                double upperRangeMaxAbsDihAngle1,
                                double lowerRangeMinAbsDihAngle2,
                                double lowerRangeMaxAbsDihAngle2,
                                double upperRangeMinAbsDihAngle2,
                                double upperRangeMaxAbsDihAngle2)
```
    Instantiates new disulphide bridges criteria using custom boundary values. See here.
    
    Parameters:
    
    minDistanceBtwSulphurs - Minimum distance between sulphur atoms of participating cysteines.
    
    maxDistanceBtwSulphurs - Maximum distance between sulphur atoms of participating cysteines.
    
    minAbsDihAngleSS - Minimum dihedral angle between planes formed by CB1, S1, S2 and S1, S2, CB2 atoms (1 - first cysteine, 2 - second cysteine).
    
    maxAbsDihAngleSS - Maximum dihedral angle between planes formed by CB1, S1, S2 and S1, S2, CB2 atoms (1 - first cysteine, 2 - second cysteine).
    
    lowerRangeMinAbsDihAngle1 - Minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in first range.
    
    lowerRangeMaxAbsDihAngle1 - Maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in first range.
    
    upperRangeMinAbsDihAngle1 - Minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in second range.
    
    upperRangeMaxAbsDihAngle1 - Maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in second range.
    
    lowerRangeMinAbsDihAngle2 - Minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in first range.
    
    lowerRangeMaxAbsDihAngle2 - Maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in first range.
    
    upperRangeMinAbsDihAngle2 - Minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in second range.
    
    upperRangeMaxAbsDihAngle2 - Maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in second range.
- Method Detail
  - getDistanceBtwCAs
```
public double getDistanceBtwCAs()
```
    Returns maximum distance between CA atoms of participating cysteines.
    
    Returns:
    
    Maximum distance between CA atoms of participating cysteines.
  - getDistanceBtwCBs
```
public double getDistanceBtwCBs()
```
    Returns maximum distance between CB atoms of participating cysteines.
    
    Returns:
    
    Maximum distance between CB atoms of participating cysteines.
  - getMinDistanceBtwSulphurs
```
public double getMinDistanceBtwSulphurs()
```
    Returns minimum distance between sulphur atoms of participating cysteines.
    
    Returns:
    
    Minimum distance between sulphur atoms of participating cysteines.
  - getMaxDistanceBtwSulphurs
```
public double getMaxDistanceBtwSulphurs()
```
    Returns maximum distance between sulphur atoms of participating cysteines.
    
    Returns:
    
    Maximum distance between sulphur atoms of participating cysteines.
  - getMinAbsDihAngleSS
```
public double getMinAbsDihAngleSS()
```
    Returns minimum dihedral angle between planes formed by CB1, S1, S2 and S1, S2, CB2 atoms (1 - first cysteine, 2 - second cysteine).
    
    Returns:
    
    Minimum dihedral angle between planes formed by CB1, S1, S2 and S1, S2, CB2 atoms (1 - first cysteine, 2 - second cysteine).
  - getMaxAbsDihAngleSS
```
public double getMaxAbsDihAngleSS()
```
    Returns maximum dihedral angle between planes formed by CB1, S1, S2 and S1, S2, CB2 atoms (1 - first cysteine, 2 - second cysteine).
    
    Returns:
    
    Maximum dihedral angle between planes formed by CB1, S1, S2 and S1, S2, CB2 atoms (1 - first cysteine, 2 - second cysteine).
  - getLowerRangeMinAbsDihAngle1
```
public double getLowerRangeMinAbsDihAngle1()
```
    Returns minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in first range.
    
    Returns:
    
    Minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in first range.
  - getLowerRangeMaxAbsDihAngle1
```
public double getLowerRangeMaxAbsDihAngle1()
```
    Returns maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in first range.
    
    Returns:
    
    Maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in first range.
  - getUpperRangeMinAbsDihAngle1
```
public double getUpperRangeMinAbsDihAngle1()
```
    Returns minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in second range.
    
    Returns:
    
    Minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in second range.
  - getUpperRangeMaxAbsDihAngle1
```
public double getUpperRangeMaxAbsDihAngle1()
```
    Returns maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in second range.
    
    Returns:
    
    Maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of first cysteine in second range.
  - getLowerRangeMinAbsDihAngle2
```
public double getLowerRangeMinAbsDihAngle2()
```
    Returns minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in first range.
    
    Returns:
    
    Minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in first range.
  - getLowerRangeMaxAbsDihAngle2
```
public double getLowerRangeMaxAbsDihAngle2()
```
    Returns maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in first range.
    
    Returns:
    
    Maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in first range.
  - getUpperRangeMinAbsDihAngle2
```
public double getUpperRangeMinAbsDihAngle2()
```
    Returns minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in second range.
    
    Returns:
    
    Minimum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in second range.
  - getUpperRangeMaxAbsDihAngle2
```
public double getUpperRangeMaxAbsDihAngle2()
```
    Returns maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in second range.
    
    Returns:
    
    Maximum dihedral angle between planes formed by N, CA, CB and CA, CB, S atoms of second cysteine in second range.
  - equals
```
public boolean equals(java.lang.Object o)
```
    Overrides:
    
    equals in class java.lang.Object
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class java.lang.Object
  - toString
```
public java.lang.String toString()
```
    Overrides:
    
    toString in class java.lang.Object

Class DisulphideBridgeCriteria

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

DisulphideBridgeCriteria

DisulphideBridgeCriteria

Method Detail

getDistanceBtwCAs

getDistanceBtwCBs

getMinDistanceBtwSulphurs

getMaxDistanceBtwSulphurs

getMinAbsDihAngleSS

getMaxAbsDihAngleSS

getLowerRangeMinAbsDihAngle1

getLowerRangeMaxAbsDihAngle1

getUpperRangeMinAbsDihAngle1

getUpperRangeMaxAbsDihAngle1

getLowerRangeMinAbsDihAngle2

getLowerRangeMaxAbsDihAngle2

getUpperRangeMinAbsDihAngle2

getUpperRangeMaxAbsDihAngle2

equals

hashCode

toString